STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5193-demethylubiquinone-9 3-methyltransferase family protein. (144 aa)    
Predicted Functional Partners:
DM82_6119
YCII-related domain protein.
    0.938
DM82_5459
YCII-related domain protein.
    0.930
DM82_130
Glutathione-dependent formaldehyde-activating enzyme family protein.
 
    0.819
DM82_2999
3-demethylubiquinone-9 3-methyltransferase family protein.
 
  
 0.782
DM82_5700
3-demethylubiquinone-9 3-methyltransferase family protein.
 
  
 0.770
DM82_2553
Glyoxalase-like domain protein.
 
  
 0.475
DM82_1641
Hypothetical protein.
   
    0.453
DM82_4968
Hypothetical protein.
   
    0.453
DM82_3498
phnA Zinc-Ribbon family protein.
     
 0.415
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.