Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cbsPyridoxal-phosphate dependent enzyme family protein. (324 aa)    
Predicted Functional Partners:
metC-2
cysta_beta_ly_B: cystathionine beta-lyase.
 
 0.970
metC
cysta_beta_ly_B: cystathionine beta-lyase.
 
 0.969
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
 
 0.968
cysE
cysE: serine O-acetyltransferase.
 
 0.966
cysE_4
Hypothetical protein; Serine acetyltransferase, N-terminal family protein.
  
 0.957
cysE_3
Bacterial transferase hexapeptide family protein.
  
 0.957
DM82_5639
Flavodoxin family protein.
  
 
 0.947
narB_2
FAD binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.943
sir_2
Nitrite and sulphite reductase 4Fe-4S domain protein.
  
 
 0.941
mdeA_1
Aminotransferase class I and II family protein.
 
 0.939
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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