Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM82_5200Bacterial regulatory s, luxR family protein. (81 aa)    
Predicted Functional Partners:
evgS
Response regulator.
  
 
 0.920
zraS_3
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
 
 0.869
prkC
Tyrosine kinase family protein.
  
 
 0.831
escU
escU.
  
  
 0.794
degS_2
Response regulator.
 
 
 0.789
sucA
2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
    
 
 0.758
DM82_5163
Hypothetical protein.
   
    0.752
sseC
Secretion system effector C (SseC) like family protein.
  
  
 0.743
sseD
Hypothetical protein.
  
  
 0.737
narX_2
Histidine kinase family protein.
 
 
 0.726
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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