Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ydcObenE: benzoate transporter family protein. (405 aa)    
Predicted Functional Partners:
DM82_522
VWA domain containing CoxE-like family protein.
       0.661
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
       0.551
benB
benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit.
 
   
 0.535
benC
Benzoate 1,2-dioxygenase electron transfer component.
 
   
 0.503
catB
Mucon_cyclo: muconate and chloromuconate cycloisomerases family protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.483
catC
Muco_delta: muconolactone delta-isomerase.
 
   
 0.474
ftsH_1
Sigma-54 interaction domain protein.
       0.472
DM82_1859
Cupin superfamily protein.
  
    0.455
ascD
2Fe-2S iron-sulfur cluster binding domain protein.
     
 0.447
benA
benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit.
 
   
 0.406
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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