STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ftsH_1Sigma-54 interaction domain protein. (280 aa)    
Predicted Functional Partners:
DM82_522
VWA domain containing CoxE-like family protein.
 
    0.911
adiA
Hypothetical protein; orn/Lys/Arg decarboxylase, N-terminal domain protein.
   
 
 0.609
DM82_6342
Glutathione-dependent formaldehyde-activating enzyme family protein.
  
    0.574
DM82_524
Cytochrome c family protein.
       0.538
cc4_2
Cytochrome c family protein.
       0.476
maeB_1
Malic enzyme, NAD binding domain protein.
  
    0.450
maeB
NADP-dependent malic enzyme; Belongs to the malic enzymes family.
  
    0.450
DM82_2123
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
     0.439
fadD_3
AMP-binding enzyme family protein.
 
    0.437
ydcO
benE: benzoate transporter family protein.
       0.436
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.