Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ydaF_1Acetyltransferase family protein. (209 aa)    
Predicted Functional Partners:
dltA-2
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
  
  
 0.838
ltaA
L-allo-threonine aldolase.
       0.806
speG
Spermidine N(1)-acetyltransferase.
 
   
 0.618
DM82_5236
Carbamoyltransferase family protein.
       0.590
DM82_1064
Acetyltransferase family protein.
 
     0.588
argH_3
ATP-grasp domain protein.
     
 0.496
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.462
cysK_2
Pyridoxal-phosphate dependent enzyme family protein.
       0.436
DM82_5242
Hypothetical protein.
       0.436
DM82_5243
Major Facilitator Superfamily protein.
       0.436
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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