STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5243Major Facilitator Superfamily protein. (410 aa)    
Predicted Functional Partners:
cysK_2
Pyridoxal-phosphate dependent enzyme family protein.
  
    0.817
DM82_5242
Hypothetical protein.
       0.809
argH_3
ATP-grasp domain protein.
       0.673
DM82_5244
GHMP kinase N terminal domain protein.
       0.614
argG-2
argG: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 
 0.606
argH-2
argH: argininosuccinate lyase.
       0.588
dltA-2
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
  
  
 0.489
lgrA
Formyl transferase family protein.
       0.482
ltaA
L-allo-threonine aldolase.
       0.441
ydaF_1
Acetyltransferase family protein.
       0.436
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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