STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5248Methyltransferase small domain protein. (366 aa)    
Predicted Functional Partners:
cobJ
cobJ_cbiH: precorrin-3B C17-methyltransferase.
  
  
 0.877
pat
Aminotransferase class I and II family protein.
  
  
 0.794
lgrA
Formyl transferase family protein.
       0.648
DM82_5250
Cupin-like domain protein.
       0.634
mbtH_3
mbtH-like family protein.
       0.634
cobM
cobM_cbiF: precorrin-4 C11-methyltransferase.
  
  
 0.632
cobI
Precorrin-2 C20-methyltransferase; Methylates precorrin-2 at the C-20 position to produce precorrin-3A.
  
  
 0.587
DM82_5244
GHMP kinase N terminal domain protein.
  
    0.543
argH-2
argH: argininosuccinate lyase.
       0.531
argG-2
argG: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.531
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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