Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5250Cupin-like domain protein. (294 aa)    
Predicted Functional Partners:
mbtH_3
mbtH-like family protein.
       0.809
rplP
Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.698
DM82_5248
Methyltransferase small domain protein.
       0.634
pat
Aminotransferase class I and II family protein.
       0.594
DM82_5064
2OG-Fe(II) oxygenase superfamily protein.
  
     0.501
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
 
     0.498
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
 
     0.490
lgrA
Formyl transferase family protein.
       0.484
argH-2
argH: argininosuccinate lyase.
       0.411
argG-2
argG: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.411
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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