Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rtcBtRNA-splicing ligase RtcB family protein; Belongs to the RtcB family. (477 aa)    
Predicted Functional Partners:
DM82_5258
Archease family protein.
 
 0.997
DM82_2967
mut7-C ubiquitin family protein.
  
     0.620
DM82_5256
Hypothetical protein.
       0.601
rhlE_2
Hypothetical protein; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
   
 0.567
dbpA
Hypothetical protein; Helicase conserved C-terminal domain protein; Belongs to the DEAD box helicase family.
   
 0.567
rhlE_1
Hypothetical protein; Helicase conserved C-terminal domain protein; Belongs to the DEAD box helicase family.
   
 0.567
DM82_5253
Bacterial capsule synthesis PGA_cap family protein.
 
     0.567
rhlE_3
Hypothetical protein; Helicase conserved C-terminal domain protein; Belongs to the DEAD box helicase family.
   
 0.567
pncB-2
Nicotinate phosphoribosyltransferase family protein; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
 
     0.545
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
  
 0.500
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.