STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cfaubiE/COQ5 methyltransferase family protein. (264 aa)    
Predicted Functional Partners:
DM82_5272
Taurine catabolism dioxygenase TauD, TfdA family protein.
       0.678
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
     
 0.669
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
     
 0.669
DM82_4838
Calcineurin-like phosphoesterase family protein.
  
     0.537
DM82_6361
AMP-binding enzyme family protein.
 
   
 0.450
cmdD_1
AA-adenyl-dom: amino acid adenylation domain protein.
     
 0.430
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
 
 0.413
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.