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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5272Taurine catabolism dioxygenase TauD, TfdA family protein. (386 aa)    
Predicted Functional Partners:
DM82_5369
Carnitine_bodg: gamma-butyrobetaine hydroxylase.
  
  
 
0.925
DM82_1437
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
   
  0.914
puuC_1
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
   
  0.914
gabD_1
Aldehyde dehydrogenase family protein.
   
  0.914
cfa
ubiE/COQ5 methyltransferase family protein.
       0.667
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
  
  
 0.614
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
  
  
 0.614
bioC_2
ubiE/COQ5 methyltransferase family protein.
 
    0.482
ssuB_4
ABC transporter family protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
  
    0.437
dltA-2
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
  
  
 0.434
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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