Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ybhSABC-2 type transporter family protein. (378 aa)    
Predicted Functional Partners:
ybhF_2
ABC transporter family protein.
  
 0.995
ybhF_1
ABC transporter family protein.
  
 0.990
czcB_2
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  
 0.957
DM82_6227
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  
 0.790
ybhR
ABC-2 type transporter family protein.
 
    
0.731
nodI
Nodulation ABC transporter NodI; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
 
  
 0.696
drrA_2
ABC transporter family protein.
 
  
 0.640
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
  
  
 0.553
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
  
  
 0.553
ccmA-4
ccmA: heme ABC exporter, ATP-binding protein CcmA.
 
  
0.529
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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