Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybhF_1ABC transporter family protein. (343 aa)    
Predicted Functional Partners:
ybhS
ABC-2 type transporter family protein.
  
 0.990
ybhR
ABC-2 type transporter family protein.
  
 0.981
czcB_2
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  
 0.949
ybhF_2
ABC transporter family protein.
 
    
0.797
yhhJ
Inner membrane transport permease yhhJ.
 
  
 0.789
DM82_6227
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  
 0.633
DM82_3693
ABC-2 type transporter family protein.
 
  
 0.568
yadH_2
ABC-2 type transporter family protein.
  
  
 0.480
DM82_5282
Hypothetical protein.
       0.478
yadH_1
nodJ: ABC-2 type transporter, NodJ family protein.
  
  
 0.464
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.