Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ybhF_2ABC transporter family protein. (317 aa)    
Predicted Functional Partners:
ybhS
ABC-2 type transporter family protein.
  
 0.995
ybhR
ABC-2 type transporter family protein.
  
 0.990
czcB_2
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  
 0.949
ybhF_1
ABC transporter family protein.
 
    
0.797
yhhJ
Inner membrane transport permease yhhJ.
  
 0.780
DM82_6227
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  
 0.600
DM82_3693
ABC-2 type transporter family protein.
 
  
 0.527
atpC-2
ATP synthase, Delta/Epsilon chain, beta-sandwich domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
   0.481
DM82_5282
Hypothetical protein.
       0.478
DM82_5259
ATPase_P-type: HAD ATPase, P-type, IC family protein.
 
 0.436
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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