STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pkn1Sulfatase-modifying factor enzyme 1 family protein. (327 aa)    
Predicted Functional Partners:
DM82_5294
WD domain, G-beta repeat family protein.
 
  
 0.843
ribBA_3
GTP cyclohydrolase II family protein.
       0.768
DM82_6294
Phosphoesterase family protein.
  
   0.733
DM82_5295
Methyltransferase domain protein.
       0.732
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
  
  
 0.622
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
  
  
 0.622
egtD
egtD_ergothio: dimethylhistidine N-methyltransferase.
 
  
 0.605
ribD-2
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.584
DM82_5298
O-methyltransferase family protein.
 
     0.519
pvdA
FAD-NAD(P)-binding family protein.
  
  
 0.460
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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