Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_5306Transcriptional regulator PadR-like family protein. (185 aa)    
Predicted Functional Partners:
DM82_5304
snoaL-like domain protein.
 
     0.705
fadH_1
NADH:flavin oxidoreductase / NADH oxidase family protein.
 
     0.703
DM82_6259
Bacterial regulatory s, tetR family protein.
  
     0.597
hapE_2
Flavin-binding monooxygenase-like family protein.
 
     0.466
thiM
Hydroxyethylthiazole kinase family protein; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family.
       0.447
DM82_5352
Putative metal-dependent hydrolase family protein.
  
     0.405
budC_5
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.405
DM82_4706
Putative metal-dependent hydrolase family protein.
  
     0.404
fadH_2
NADH:flavin oxidoreductase / NADH oxidase family protein.
 
     0.404
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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