Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_53432OG-Fe(II) oxygenase superfamily protein. (227 aa)    
Predicted Functional Partners:
bfrD
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
    0.968
DM82_5342
Sel1 repeat family protein.
 
    0.863
fptA
Fe(3+)-pyochelin receptor.
 
  
 0.576
cirA_2
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
    0.493
fhuA_2
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
  
 0.482
DM82_2192
tonB dependent receptor family protein.
  
  
 0.454
DM82_5639
Flavodoxin family protein.
     
 0.451
DM82_5176
fecR family protein.
  
    0.448
fhuA_3
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
    0.438
exbD_4
Biopolymer transport ExbD/TolR family protein.
 
    0.437
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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