STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5352Putative metal-dependent hydrolase family protein. (300 aa)    
Predicted Functional Partners:
DM82_4707
Short chain dehydrogenase family protein.
 
     0.795
ureR_1
Helix-turn-helix domain protein.
  
     0.749
budC_5
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.746
alkB1
Fatty acid desaturase family protein.
 
     0.743
lvr_2
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.742
DM82_5098
merR HTH regulatory family protein.
 
     0.737
DM82_4708
Metallopeptidase M24 family protein.
 
     0.735
gadW
Helix-turn-helix domain protein.
  
     0.733
dehH1_1
Alpha/beta hydrolase fold family protein.
  
     0.728
cfaD
Helix-turn-helix domain protein.
  
     0.723
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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