Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_5374lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD. (159 aa)    
Predicted Functional Partners:
sseC
Secretion system effector C (SseC) like family protein.
  
  
 0.898
prgK_2
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
  
 0.846
prgK_4
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
  
 0.838
invG_2
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
 
  
 0.797
DM82_4942
fliQ_rel_III: type III secretion, HrpO family protein.
 
  
 0.793
invG_4
Type II/III secretion system family protein.
 
  
 0.759
sicA
lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD.
 
 
 0.757
sseD
Hypothetical protein.
  
  
 0.742
fliQ_3
fliQ_rel_III: type III secretion, HrpO family protein.
 
  
 0.737
epaR-2
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
    0.734
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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