Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rhaR_2Helix-turn-helix domain protein. (234 aa)    
Predicted Functional Partners:
eprI
III_needle: type III secretion apparatus needle protein.
       0.769
rhaS_8
Helix-turn-helix domain protein.
  
   0.683
rhaR_1
Helix-turn-helix domain protein.
  
   0.661
rhaS_5
Helix-turn-helix domain protein.
  
   0.658
rhaS_2
Helix-turn-helix domain protein.
  
   0.652
soxS_1
Helix-turn-helix domain protein.
  
     0.650
rhaR_5
Helix-turn-helix domain protein.
  
   0.596
rhaS_7
Helix-turn-helix domain protein.
  
   0.557
melR_2
Helix-turn-helix domain protein.
  
     0.551
prgK_2
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
  
 0.547
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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