STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eprIIII_needle: type III secretion apparatus needle protein. (71 aa)    
Predicted Functional Partners:
eprI-2
III_needle: type III secretion apparatus needle protein.
     
 0.987
rhaR_2
Helix-turn-helix domain protein.
       0.769
DM82_5383
lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC.
     
 0.513
prgK_2
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
    
 0.505
DM82_5381
Type III secretion system subunit.
       0.486
DM82_5382
Hypothetical protein.
       0.486
pulD_1
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
    
 0.474
xpsD_2
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
    
 0.474
gspD
type_II_gspD: type II secretion system protein D.
    
 0.474
invG_1
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
    
 0.474
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.