Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_5381Type III secretion system subunit. (269 aa)    
Predicted Functional Partners:
DM82_5383
lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC.
  
    0.954
prgK_2
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
  
    0.857
DM82_5382
Hypothetical protein.
     
 0.807
DM82_5379
Hypothetical protein; yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain.
       0.804
DM82_5386
type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family.
  
  
 0.512
DM82_5371
Putative secretion system effector SseE.
  
  
 0.511
sseD
Hypothetical protein.
  
    0.509
eprI
III_needle: type III secretion apparatus needle protein.
       0.488
sseB
espA-like secreted family protein.
  
    0.463
rhaR_2
Helix-turn-helix domain protein.
       0.451
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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