Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cyaAnthrax toxin LF subunit. (400 aa)    
Predicted Functional Partners:
DM82_5127
Autotrans_barl: outer membrane autotransporter barrel domain protein.
  
  
 0.625
DM82_5386
type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family.
  
    0.614
DM82_1878
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.553
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
  
  
 0.515
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
  
  
 0.515
invG_2
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
  
  
 0.470
DM82_5385
Hypothetical protein.
       0.468
hlyB
ABC transporter family protein.
  
  
 0.457
apxIB
ABC transporter family protein.
  
  
 0.457
evgS
Response regulator.
  
  
 0.451
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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