Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_5386type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family. (402 aa)    
Predicted Functional Partners:
sseD
Hypothetical protein.
  
  
 0.871
DM82_5383
lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC.
  
  
 0.864
sseB
espA-like secreted family protein.
  
  
 0.856
invG_2
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
  
  
 0.854
DM82_5388
Hypothetical protein.
       0.803
sucA
2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
    
 
 0.740
DM82_5385
Hypothetical protein.
       0.714
prkC
Tyrosine kinase family protein.
   
 
 0.670
DM82_5371
Putative secretion system effector SseE.
  
  
 0.629
escU
escU.
  
  
 0.629
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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