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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epaO-2spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family. (349 aa)    
Predicted Functional Partners:
epaO
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
     
  0.900
epaO-3
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
     
 
0.900
epaO-4
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
     
  0.900
yscN_2
III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase.
  
 
 0.893
flgJ
flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ.
  
  
 0.882
DM82_5804
Hypothetical protein.
  
 
 0.878
cph2_1
GGDEF: diguanylate cyclase domain protein.
  
  
 0.869
invA
Invasion protein invA.
  
  
 0.864
DM82_5391
Putative secretion system apparatus.
     
 0.808
DM82_5394
Hypothetical protein.
       0.803
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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