Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
epaP-2yscR: type III secretion apparatus protein, YscR/HrcR family. (216 aa)    
Predicted Functional Partners:
epaR-2
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.981
fliQ_2
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.980
escU
escU.
 
  
 0.977
invA
Invasion protein invA.
 
 
 0.961
epaR-4
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.936
epaR-3
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.928
yscN_2
III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase.
 
  
 0.923
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.918
ssaV_1
hrcV: type III secretion, HrcV family protein.
 
 
 0.917
ssaV_3
hrcV: type III secretion, HrcV family protein.
 
 
 0.917
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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