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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epaR-2fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT. (260 aa)    
Predicted Functional Partners:
escU
escU.
 
  
 0.991
epaP-2
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.985
fliQ_2
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.981
epaP
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.957
epaP-4
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.954
invA
Invasion protein invA.
 
 
 0.952
epaP-3
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.945
epaR-3
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
  
  
 
0.927
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
  
  
 
0.924
DM82_4942
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.917
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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