Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tetDHelix-turn-helix domain protein. (314 aa)    
Predicted Functional Partners:
xylB-2
xylB: xylulokinase.
 
     0.829
DM82_5405
D-xylulose reductase.
 
     0.728
ugpC_4
ABC transporter family protein; Belongs to the ABC transporter superfamily.
       0.670
ycjO_3
Binding--dependent transport system inner membrane component family protein.
       0.648
ycjP_5
Binding--dependent transport system inner membrane component family protein.
       0.648
chbR
Helix-turn-helix domain protein.
  
     0.612
rhaS_2
Helix-turn-helix domain protein.
  
   0.564
DM82_5402
Bacterial extracellular solute-binding family protein.
 
     0.562
araC_2
Helix-turn-helix domain protein.
  
     0.464
yihS
N-acylglucosamine 2-epimerase family protein.
  
     0.408
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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