Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
aphA_3Histone deacetylase domain protein. (340 aa)    
Predicted Functional Partners:
hflB-2
ftsH_fam: ATP-dependent metallopeptidase HflB family protein; Belongs to the AAA ATPase family.
 
 
 0.787
DM82_5294
WD domain, G-beta repeat family protein.
  
 
 0.777
DM82_2636
Hypothetical protein.
    
 0.714
amaB_4
Hydantase: amidase, hydantoinase/carbamoylase family protein.
       0.705
DM82_3101
Double zinc ribbon family protein.
   
 
 0.645
yhjE_3
Sugar (and other) transporter family protein.
       0.645
DM82_837
Caspase domain protein.
   
 0.590
htpG
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; Molecular chaperone. Has ATPase activity.
    
 0.577
cysL_3
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
 
     0.576
DM82_1577
Ankyrin repeat family protein.
   
 0.549
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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