STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5434Hypothetical protein. (256 aa)    
Predicted Functional Partners:
DM82_5435
B12 binding domain protein.
 
     0.967
yiaD_2
ompA family protein.
 
     0.966
DM82_5437
Hypothetical protein.
 
     0.966
DM82_5926
Bacterial DNA-binding family protein; Belongs to the bacterial histone-like protein family.
  
     0.657
DM82_2654
Histone H1-like nucleoHC2 family protein.
  
     0.646
DM82_123
Hypothetical protein.
  
     0.591
DM82_617
Putative lipoprotein transmembrane.
  
     0.547
DM82_2305
Hypothetical protein.
  
     0.523
DM82_183
snoaL-like domain protein.
  
     0.522
DM82_2777
Hypothetical protein.
  
     0.490
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.