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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apxIBABC transporter family protein. (707 aa)    
Predicted Functional Partners:
cvaA_2
hlyD secretion family protein.
 
 
 0.988
cvaA_1
hlyD secretion family protein.
 
 
 0.942
hlyB
ABC transporter family protein.
  
  
 
0.916
tolC
Outer membrane efflux family protein.
 
  
 0.851
yqjH
Siderophore-interacting FAD-binding domain protein.
   
   0.795
DM82_5446
Hypothetical protein.
       0.781
irtB_1
ABC transporter family protein.
 
 
0.698
yheI
ABC transporter family protein.
 
 
0.661
irtB_2
ABC transporter family protein.
 
 
0.640
msbA
Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
0.640
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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