STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaQ_1Glycosyltransferase 9 family protein. (381 aa)    
Predicted Functional Partners:
DM82_4504
Glycosyltransferase 9 family protein.
 
  
 0.854
pimA_2
Glycosyl transferases group 1 family protein.
 
  
 0.843
DM82_4505
Glycosyltransferase 9 family protein.
 
  
 0.803
DM82_546
O-Antigen ligase family protein.
  
  
 0.797
rfaE-2
Bifunctional protein RfaE; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
 
  
 0.793
rfaE
Domain I; rfaE_dom_I: bifunctional protein RfaE, domain I.
 
  
 0.790
gmhA
SIS domain protein.
 
   
 0.772
gmhB
HAD-SF-IIIA: HAD hydrolase, family IIIA domain protein.
 
   
 0.756
rfaC
heptsyl_trn_I: lipopolysaccharide heptosyltransferase I.
  
     0.739
rfaC-2
heptsyl_trn_I: lipopolysaccharide heptosyltransferase I.
  
     0.729
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.