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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5459YCII-related domain protein. (145 aa)    
Predicted Functional Partners:
DM82_519
3-demethylubiquinone-9 3-methyltransferase family protein.
    0.926
sigK
Sigma-70 region 2 family protein; Belongs to the sigma-70 factor family.
 
     0.800
DM82_4734
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
    0.578
DM82_4872
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
    0.557
DM82_6118
Polyketide cyclase / dehydrase and lipid transport family protein.
 
     0.459
DM82_6093
Hypothetical protein.
 
     0.446
DM82_4889
Hypothetical protein; Domain of unknown function family protein.
 
     0.435
aroG_2
3-deoxy-7-phosphoheptulonate synthase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).
       0.431
DM82_6120
YCII-related domain protein.
 
   
0.426
DM82_2617
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
    0.405
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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