STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaGProtocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit. (197 aa)    
Predicted Functional Partners:
pcaH
Protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit.
 
 0.999
pcaB
protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.984
pobA
FAD binding domain protein.
 
  
 0.984
pcaC
decarb_PcaC: 4-carboxymuconolactone decarboxylase.
 
  
 0.790
pcaQ
TF_pcaQ: pca operon transcription factor PcaQ; Belongs to the LysR transcriptional regulatory family.
 
     0.767
catA
Catechol_proteo: catechol 1,2-dioxygenase.
  
  
 0.767
DM82_5108
Carboxymuconolactone decarboxylase family protein.
 
  
 0.741
hpd_2
Xylose isomerase-like TIM barrel family protein.
 
   
 0.724
pcaD
protocat_pcaD: 3-oxoadipate enol-lactonase.
 
   
 0.670
catD_2
Alpha/beta hydrolase fold family protein.
 
  
 0.627
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.