STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pimA_2Glycosyl transferases group 1 family protein. (416 aa)    
Predicted Functional Partners:
rfaQ_1
Glycosyltransferase 9 family protein.
 
  
 0.846
DM82_546
O-Antigen ligase family protein.
  
  
 0.812
mfpsA_2
Glycosyl transferases group 1 family protein.
 
     0.686
wcaJ_2
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
 
  
 0.621
wcaJ_3
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
 
  
 0.621
treZ
Carbohydrate-binding module 48 family protein; Belongs to the glycosyl hydrolase 13 family.
   
 0.615
DM82_2329
Polysaccharide biosynthesis family protein.
 
  
 0.567
rfaQ
heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III.
  
  
 0.567
glgA
Glycosyl transferases group 1 family protein.
  
   
 0.562
wcaJ_1
EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase family protein.
 
  
 0.489
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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