Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ybbH_3SIS domain protein. (315 aa)    
Predicted Functional Partners:
iaaA
Isoaspartyl peptidase.
  
    0.928
dppA_5
D-aminopeptidase family protein.
 
     0.739
murR_3
SIS domain protein.
  
     0.725
nikE-3
nickel_nikE: nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily.
  
    0.723
murR_2
SIS domain protein.
  
     0.690
DM82_5475
Peptidase S58 family protein.
 
    0.524
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
 
  
 0.514
gsiB_2
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
     0.513
iolC_1
pfkB carbohydrate kinase family protein.
 
   
 0.413
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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