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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gsiB_3Bacterial extracellular solute-binding s, 5 Middle family protein. (514 aa)    
Predicted Functional Partners:
gsiC_2
Binding--dependent transport system inner membrane component family protein.
 0.936
ddpC_2
Binding--dependent transport system inner membrane component family protein.
 
 0.931
ccmA-4
ccmA: heme ABC exporter, ATP-binding protein CcmA.
    
 0.862
gsiA_8
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
 
 
 0.856
artM_3
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
     
 0.855
gsiA_9
ABC transporter family protein; Belongs to the ABC transporter superfamily.
 
 
 0.854
dppB_2
Binding--dependent transport system inner membrane component family protein.
 0.841
oppC_1
Binding--dependent transport system inner membrane component family protein.
 
 0.821
dppB_1
Binding--dependent transport system inner membrane component family protein.
 0.811
dppC
Binding--dependent transport system inner membrane component family protein.
 
 0.803
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.