STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcnBHypothetical protein. (128 aa)    
Predicted Functional Partners:
DM82_2305
Hypothetical protein.
  
     0.583
DM82_2009
smpA / OmlA family protein.
 
    0.529
DM82_617
Putative lipoprotein transmembrane.
 
    0.470
DM82_3128
ATP synthase I chain family protein.
  
     0.468
flgM
flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM.
  
     0.468
DM82_1777
AIG2-like family protein.
  
     0.452
DM82_2619
Barstar family protein.
  
     0.444
DM82_183
snoaL-like domain protein.
  
     0.424
ompW_4
ompW family protein.
  
     0.417
gpmA_3
Histidine phosphatase super family protein.
  
     0.413
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.