Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
frlR_1UTRA domain protein. (241 aa)    
Predicted Functional Partners:
DM82_5515
2-pyrone-4,6-dicarboxylic acid hydrolase, putative.
 
     0.610
naiP_5
Sugar (and other) transporter family protein.
       0.583
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
 
  
 0.520
rhmT_4
Major Facilitator Superfamily protein.
       0.514
phnF
C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF.
  
     0.486
puuR_2
Helix-turn-helix family protein.
  
  
 0.480
puuR_3
Helix-turn-helix family protein.
  
  
 0.480
DM82_5000
Helix-turn-helix family protein.
  
  
 0.480
ripA_1
Helix-turn-helix domain protein.
  
  
 0.471
pdhR_4
Bacterial regulatory s, gntR family protein.
  
  
 0.420
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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