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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5535RND_mfp: efflux transporter, RND family, MFP subunit. (462 aa)    
Predicted Functional Partners:
emrB_5
efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 family protein; Belongs to the major facilitator superfamily.
 
 0.902
DM82_5536
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
 0.899
macB_1
ABC transporter family protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.876
emrB_1
efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 family protein; Belongs to the major facilitator superfamily.
 
 0.875
DM82_4641
Major Facilitator Superfamily protein.
 
 0.875
emrB_3
efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 family protein; Belongs to the major facilitator superfamily.
 
 0.874
DM82_4640
Sugar (and other) transporter family protein.
 
 0.865
emrB_2
Major Facilitator Superfamily protein.
 
 0.823
mdtP_2
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
 0.809
mdtP_3
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
 0.808
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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