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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betITranscriptional repressor BetI; Repressor involved in choline regulation of the bet genes. (195 aa)    
Predicted Functional Partners:
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
     0.854
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
  
 0.805
DM82_4664
Substrate binding domain of ABC-type glycine betaine transport system family protein.
  
     0.671
rutR_3
Bacterial regulatory s, tetR family protein.
  
     0.647
choX
ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein.
  
     0.611
choX-2
ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein.
  
     0.600
polB
DNA polymerase family B, exonuclease domain protein.
  
     0.447
yhfQ
Periplasmic binding family protein.
  
     0.437
DM82_4672
Hypothetical protein.
  
    0.418
rhaS_5
Helix-turn-helix domain protein.
  
     0.407
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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