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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5547Hypothetical protein. (162 aa)    
Predicted Functional Partners:
katE
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.716
tkrA
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
     
 0.664
dps2
Ferritin-like domain protein; Belongs to the Dps family.
  
  
 0.633
zraS_3
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
  
 0.553
DM82_713
penta_MxKDx: pentapeptide MXKDX repeat family protein.
   
    0.504
DM82_5546
Hypothetical protein.
       0.490
ygaU
BON domain protein.
   
  
 0.453
yhdN_1
Aldo/keto reductase family protein.
  
  
 0.439
dkgB
Aldo/keto reductase family protein.
  
  
 0.439
DM82_1226
Hypothetical protein; prkA serine kinase C-terminal domain protein.
   
    0.434
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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