Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM82_5550Cupin domain protein. (116 aa)    
Predicted Functional Partners:
hadL
HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein.
 
     0.785
DM82_4888
Cupin domain protein.
  
     0.592
mco
Multicopper oxidase family protein.
   
    0.481
copA_2
Multicopper oxidase family protein.
   
    0.481
soxA_1
FAD dependent oxidoreductase family protein.
 
    0.477
DM82_3701
3-Oxoacyl-[acyl-carrier-(ACP)] synthase III family protein.
  
     0.464
DM82_736
Copper binding s, plastocyanin/azurin family protein.
  
    0.451
doxB
Ring hydroxylating alpha subunit family protein.
  
    0.428
DM82_5544
Hypothetical protein.
  
     0.415
DM82_3801
ABC transporter, phosphonate, periplasmic substrate-binding family protein.
  
     0.400
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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