Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rhaS_7Helix-turn-helix domain protein. (374 aa)    
Predicted Functional Partners:
soxB_2
soxB: sarcosine oxidase, beta subunit.
 
     0.773
gcvT_2
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
 
     0.755
DM82_5559
Sarcosine oxidase, gamma subunit.
 
    0.752
soxD
Subunit delta of sarcosine oxidase.
 
    0.752
rhaS_2
Helix-turn-helix domain protein.
  
     0.737
DM82_4657
Electron transfer flavodomain protein.
 
     0.601
rhaR_2
Helix-turn-helix domain protein.
  
   0.557
sdaB
Sda_mono: L-serine ammonia-lyase.
       0.502
doxB
Ring hydroxylating alpha subunit family protein.
 
    0.479
hmp_3
2Fe-2S iron-sulfur cluster binding domain protein.
 
    0.439
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.