STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtnBHypothetical protein; Class II Aldolase and Adducin N-terminal domain protein. (213 aa)    
Predicted Functional Partners:
DM82_5572
Hypothetical protein.
  
 0.991
Hgd_3
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein.
 
  
 0.938
DM82_5576
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
   
 0.853
ygbM
Xylose isomerase-like TIM barrel family protein; Belongs to the hyi family.
 
  
 0.759
lutR
Bacterial regulatory s, gntR family protein.
 
     0.636
rhmT_5
Sugar (and other) transporter family protein.
       0.586
hyi
OH-pyruv-isom: hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.573
mcl2
Putative citrate lyase beta chain.
   
    0.512
mcl1
hpcH/HpaI aldolase/citrate lyase family protein; Belongs to the HpcH/HpaI aldolase family.
   
    0.512
DM82_898
hpcH/HpaI aldolase/citrate lyase family protein; Belongs to the HpcH/HpaI aldolase family.
   
    0.512
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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