Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
choX-2ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein. (316 aa)    
Predicted Functional Partners:
choW
ABC_choXWV_perm: choline ABC transporter, permease protein.
 
 0.998
proV
proV: glycine betaine/L-proline transport ATP binding subunit.
 
 0.995
opuAC_1
Substrate binding domain of ABC-type glycine betaine transport system family protein.
  
  
 
0.927
choX
ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein.
  
  
 
0.902
rhaS_8
Helix-turn-helix domain protein.
 
     0.696
betI
Transcriptional repressor BetI; Repressor involved in choline regulation of the bet genes.
  
     0.600
hmp_3
2Fe-2S iron-sulfur cluster binding domain protein.
  
    0.518
opuBC
Substrate binding domain of ABC-type glycine betaine transport system family protein.
  
 
 0.517
DM82_4657
Electron transfer flavodomain protein.
  
    0.513
doxB
Ring hydroxylating alpha subunit family protein.
 
    0.507
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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