Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
rhaS_8Helix-turn-helix domain protein. (332 aa)    
Predicted Functional Partners:
rhaS_2
Helix-turn-helix domain protein.
  
     0.737
rhaR_3
Helix-turn-helix domain protein.
  
   0.715
gcvT_2
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
 
     0.704
choX-2
ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein.
 
     0.696
rhaR_2
Helix-turn-helix domain protein.
  
   0.683
araC_3
Helix-turn-helix domain protein.
  
   0.669
soxD
Subunit delta of sarcosine oxidase.
 
    0.665
DM82_5559
Sarcosine oxidase, gamma subunit.
 
    0.663
choW
ABC_choXWV_perm: choline ABC transporter, permease protein.
 
     0.648
soxB_2
soxB: sarcosine oxidase, beta subunit.
  
     0.634
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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