STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
choWABC_choXWV_perm: choline ABC transporter, permease protein. (300 aa)    
Predicted Functional Partners:
opuAC_1
Substrate binding domain of ABC-type glycine betaine transport system family protein.
 
 0.999
proV
proV: glycine betaine/L-proline transport ATP binding subunit.
 
 0.999
choX-2
ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein.
 
 0.998
choX
ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein.
 
 0.993
DM82_4664
Substrate binding domain of ABC-type glycine betaine transport system family protein.
 
 0.960
opuBC
Substrate binding domain of ABC-type glycine betaine transport system family protein.
 
 
 0.932
rhaS_8
Helix-turn-helix domain protein.
 
     0.648
ribB-2
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
      
 0.646
ugpC_1
ABC transporter family protein; Belongs to the ABC transporter superfamily.
     
 0.547
malK
ABC transporter family protein; Belongs to the ABC transporter superfamily.
     
 0.547
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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