Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_56Putative D-serine deaminase (D-serine dehydratase) protein. (426 aa)    
Predicted Functional Partners:
dan
Amidohydrolase family protein.
 
   
 0.919
murR_2
SIS domain protein.
 
   
 0.829
yabJ_2
Endoribonuclease L-PSP family protein.
 
   
 0.790
dat_2
Aminotransferase class IV family protein.
  
   
 0.472
pgl
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
 
  
 0.461
DM82_3583
phospholipase/Carboxylesterase family protein.
  
     0.417
DM82_3081
Cytochrome c family protein.
  
  
 0.411
DM82_4596
Chitin binding domain protein.
 
     0.410
DM82_4866
Peptidase S58 family protein.
      
 0.400
DM82_5475
Peptidase S58 family protein.
      
 0.400
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.